Figure 4
From: Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns
Overview of patterns found to be associated with higher or lower OGT. Triplet FreSCOs found to be related to proteins present in organisms with a lower (left) or higher (right) OGT. At the top of the figure is a graph where each node represents an amino acid and each edge represents patterns that include the two connecting amino acids where the edge width is scaled to the number of patterns. The nodes are colored based on the properties of the amino acid: aliphatic (orange), aromatic (red), polar (blue), acidic (purple), basic (green) and glycine/proline (yellow). At the bottom of the figure are heatmaps featuring the amino acid combinations that are either enriched in lower (left) or higher (right) OGT. The color of the heatmaps corresponds to the logarithm of the correlation p-value. The heatmaps are plotted so that each pattern occurs exactly once.