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Table 1 Information about the nine causal SNPs under the alternative hypothesis in simulation study 1

From: r2VIM: A new variable selection method for random forests in genome-wide association studies

SNP

MAF

RR

no SNPs strong LD

no SNPs moderate LD

11-103959987

0.474

1.3

0

1

22-28469630

0.488

1.3

4

8

17-9807099

0.496

1.3

0

0

1-240799543

0.312

1.5

0

0

7-45984820

0.312

1.5

0

2

5-130104076

0.323

1.5

12

18

14-67463012

0.062

2

2

31

18-34645639

0.062

2

0

1

3-2770509

0.064

2

0

1

  1. Table shows SNP identifier in chromosome and position notation, minor allele frequency (MAF), relative risks (RR) and number of SNPs within a 1 Mb region that are in strong (r 2 > 0.8) or moderate LD (0.3 < r 2 ≤ 0.8)